Xiaoqiu Huang, Professor
Department of Computer Science, Iowa State University
226 Atanasoff Hall, Ames, IA 50011
EM: xqhuang AT iastate DOT edu Phone: 515-294-2432 Fax: 515-294-0258
Google Scholar Citations: Profile
Huang X, Miller W. (1991)
A Time-efficient, Linear-Space Local Similarity Algorithm.
Advances in Applied Mathematics 12:337-357.
DOI
Huang X, Adams MD, Zhou H, Kerlavage AR. (1997)
A Tool for Analyzing and Annotating Genomic Sequences.
Genomics 46: 37-45.
DOI
Huang X, Madan A. (1999)
CAP3: A DNA Sequence Assembly Program.
Genome Research 9: 868-877.
DOI
Huang X, Chao K-M. (2003)
A Generalized Global Alignment Algorithm.
Bioinformatics 19: 228-233.
DOI
Huang X, Wang J, Aluru S, Yang S-P, Hillier L. (2003)
PCAP: A Whole-Genome Assembly Program.
Genome Research 13: 2164-2170.
DOI
Ye L, Huang X. (2005)
MAP2: Multiple Alignment of Syntenic Genomic Sequences.
Nucleic Acids Research 33: 162-170.
DOI
Huang X, Yang S-P, Chinwalla A, Hillier L,
Minx P, Mardis E, Wilson R. (2006)
Application of a Superword Array in Genome Assembly.
Nucleic Acids Research 34: 201-205.
DOI
Huang X, Brutlag DL. (2007)
Dynamic Use of Multiple Parameter Sets in Sequence Alignment.
Nucleic Acids Research 35: 678-686.
DOI
Huang X. (2008)
Sequence Alignment with an Appropriate Substitution Matrix.
Journal of Computational Biology 15: 129-138.
DOI
Huang X, Vingron M. (2009)
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction
Journal of Computational Biology 16: 887-896.
DOI
Huang X. (2014)
Horizontal Transfer Generates Genetic Variation in an Asexual Pathogen.
PeerJ 2: e650.
DOI
Huang X, Das A, Sahu BB, Srivastava SK, Leandro LF,
O'Donnell K, Bhattacharyya MK. (2016)
Identification of Highly Variable Supernumerary Chromosome Segments in an Asexual Pathogen.
PLoS ONE 11: e0158183.
DOI
Das A, Huang X. (2019)
HPC: Hierarchical Phylogeny Construction.
PLoS ONE 14: e0221357.
DOI